~ CODEX · LIFESCIENTIFIC · DEV ~
Six small instruments for life-science teams, freely given. Read the inscription, copy the import, ship the work.
# pick whichever fits the lab — all MIT, all typed, no telemetry $ npm install @lifescientific/sequentia # I. sequence viewer $ npm install @lifescientific/volvere # II. molecular rotator $ npm install @lifescientific/ordinare # III. tabular sorter $ npm install @lifescientific/specula # IV. microscopy slider $ pip install lifescientific-legere # V. csv parser $ npm install @lifescientific/mitosis # VI. mitosis loop
An annotated reader for genomic strings. Long reads, custom palettes, cross-strand comparison.
// I. Sequentia — annotated genomic visualisation import SequenceViewer from '@lifescientific/sequentia'; export function Lab() return ( <SequenceViewer fasta={data} strands="both" palette="taylor" /> );
Three-dimensional ball-and-stick rotation. GPU-bound, zero dependencies, polite to touch.
// II. Volvere — 3D ball-and-stick rotation import rotate from '@lifescientific/volvere'; const handle = rotate(canvas, model: caffeine, style: 'ball-and-stick', touch: true, ); handle.spin(0.5); // rad/s
A typed, fastidious sorter for tabular biology. Knows a date from a count from an identifier.
// III. Ordinare — typed tabular sort import sort from '@lifescientific/ordinare'; const rows = sort(samples, by: 'collected_at', type: 'datetime', dir: 'desc', );
A side-by-side comparator for microscopy plates. Keyboard-driven, framework-free, accessible.
<!-- IV. Specula — side-by-side microscopy comparator --> <script type="module" src="specula.js"></script> <ls-specula left="./plate-A.tif" right="./plate-B.tif" labels="control · treated" ></ls-specula>
Reads exports from common sequencing platforms and hands you a tidy frame. Forgiving of mess.
# V. Legere — sequencer exports → tidy frames from legere import read df = read("run-2026-05-01.csv", platform="illumina", strict=True) df.describe()
An honest illustration of mitosis for teaching. Configurable timing, soft easing, attribution-friendly.
// VI. Mitosis — configurable mitosis loop import animate from '@lifescientific/mitosis'; animate(canvas, phase: 'prophase → telophase', duration: 8000, easing: 'soft', loop: true, );
┌──────────────┐ ┌──────────────┐ ┌──────────────┐
│ SEQUENTIA │ │ VOLVERE │ │ ORDINARE │
│ viewer │ │ rotator │ │ sorter │
└──────┬───────┘ └──────┬───────┘ └──────┬───────┘
│ │ │
└─────────┬─────────┴─────────┬─────────┘
│ │
┌────────▼─────────┐ ┌───────▼────────┐
│ @lifescientific/ typed primitives │
│ shared types · utilities · MIT │
└────────┬─────────┘ └───────┬────────┘
│ │
┌─────────┴─────────┬─────────┴─────────┐
│ │ │
┌──────▼───────┐ ┌──────▼───────┐ ┌──────▼───────┐
│ SPECVLA │ │ LEGERE │ │ MITOSIS │
│ slider │ │ parser │ │ animator │
└──────────────┘ └──────────────┘ └──────────────┘ — Inscribed in Optima & JetBrains Mono. Leave word here for the next dispatch.